Alignment Statistics
 	RNA-Pol S5 SRR2034939 (absolute values)	RNA-Pol S5 SRR2034939 (percentages)	Sox9 SRR2034932 (absolute values)	Sox9 SRR2034932 (percentages)
Total number of reads	NA		NA	
Aligned reads	NA		NA	
   - Uniquely matched reads	NA		NA	
   - Multiply matched reads	NA		NA	
   - Partially aligned split reads	NA		NA	
   - Fully aligned split reads	NA		NA	
Unaligned reads	NA		NA	
   - No matches found	NA		NA	
   - Too many matches	NA		NA	
Reads ignored due to failure of vendor QC	NA		NA	
Reads ignored due to small size	NA		NA	
Total reads screened	NA		NA	
Maximum read length	30		61	
Average read length	29		59	

Aligned Read Status
Type	RNA-Pol S5 SRR2034939 (absolute values)	RNA-Pol S5 SRR2034939 (percentages)	Sox9 SRR2034932 (absolute values)	Sox9 SRR2034932 (percentages)
Single End	15.619.174	100,00	20.641.504	100,00
Unaligned	0	0,00	0	0,00
Unknown	0	0,00	0	0,00

Read Distribution
Chromosome	RNA-Pol S5 SRR2034939 (absolute values)	RNA-Pol S5 SRR2034939 (percentages)	Sox9 SRR2034932 (absolute values)	Sox9 SRR2034932 (percentages)
chr1	1.110.991	7,11	1.527.595	7,40
chr2	1.185.666	7,59	1.732.951	8,40
chr3	895.235	5,73	1.229.514	5,96
chr4	987.165	6,32	1.227.243	5,95
chr5	954.340	6,11	1.177.425	5,70
chr6	848.974	5,44	1.171.620	5,68
chr7	923.540	5,91	1.096.212	5,31
chr8	817.114	5,23	1.006.340	4,88
chr9	834.106	5,34	1.180.502	5,72
chr10	826.038	5,29	1.071.726	5,19
chr11	1.009.158	6,46	1.125.190	5,45
chr12	634.208	4,06	912.185	4,42
chr13	659.864	4,22	941.285	4,56
chr14	634.580	4,06	953.064	4,62
chr15	710.869	4,55	858.972	4,16
chr16	561.788	3,60	757.610	3,67
chr17	644.703	4,13	779.776	3,78
chr18	519.714	3,33	724.240	3,51
chr19	440.287	2,82	534.232	2,59
chrX	413.740	2,65	618.894	3,00
chrY	7.094	0,05	14.929	0,07

